fix Readme

Readme.md

@@ -2,23 +2,15 @@
 
 # Introduction
 
-`fatools` is s docker container with several command to handle FASTA files.
+`cgetools` is s docker container with several tools and databases from CGE installed inside.
 
 
 # Usage
 
 To use the tool, you need to mount the working directory on `/cwd`. Example:
 ```bash
-docker run --rm -v .:/cwd registry.gitlab.unige.ch/amr-genomics/fatools fa_reheader
-docker run --rm -v .:/cwd registry.gitlab.unige.ch/amr-genomics/fatools fa_rotate
+docker run --rm -v .:/cwd registry.gitlab.unige.ch/amr-genomics/cgetools:main plasmidfinder.py
+docker run --rm -v .:/cwd registry.gitlab.unige.ch/amr-genomics/cgetools:main mlst.py
+docker run --rm -v .:/cwd registry.gitlab.unige.ch/amr-genomics/cgetools:main python3 -m resfinder
 ```
 
-
-# Building
-
-To build the container, run:
-```bash
-docker build --platform linux/amd64 -t registry.gitlab.unige.ch/amr-genomics/fatools ./
-```
-
-