@@ -37,10 +37,21 @@ Simulate marker misplacement combining different directions and magnitudes
You just need to download or clone the project to use it. Just ensure that you are using Matlab R2016b or newer (The Mathworks, USA).
## Features
MAIN_MarkerMisplacement.m - Main file, used to load other routines.
* MAIN_MarkerMisplacement.m: Main file, used to load other routines.
* MIS_Computation: Function computes a systematic error following the magnitude and direction on the specified marker MARK1 and computes kinematics using PyCGM for each misplacement.
* MIS_Res_RMSD: Function builts tables containing the RMSD calculations for each of the magnitudes, angles and for all patients.
* MIS_table_RMSD: Creates a table with RMSD +/- SD and ROM +/- SD for the different angles at 10 mm of marker misplacement.
* MIS_PlotPolar: Creates a polar plot containing the RMSD for all errors.
* MIS_PlotCurves: Plot RMSD for one direction (e.g Antero-Posterior) for all magnitudes and only one patient and for one joint.
* MIS_PlotCurves3: Plot as MIS_PlotCurves but for all lower limb angles at the same time.
* MIS_anthropometric_data: Gets the anthropometric data (age, height, bodymass, leg length, ankle and knee width)
* MIS_Correlation: Function calculates the correlation between error and % of leg length for one patient.
* MIS_Correlation_all: Same as MIS_Correlation but for general population.
## Dependencies
* Needs the image processing toolbox of Matlab.
* The Biomechanical Toolkit is required to read/write C3D files: https://github.com/Biomechanical-ToolKit/BTKCore
* pyCGM2 is required for biomechanical computations: https://github.com/pyCGM2/pyCGM2
* The 3D Kinematics and Inverse Dynamics (Dumas) is required for several matrix operations: https://ch.mathworks.com/matlabcentral/fileexchange/58021-3d-kinematics-and-inverse-dynamics
## Developer
The proposed routine has been developed by <ahref="https://www.unige.ch/medecine/kinesiology/people/mickaelf/"target="_blank">Mickael Fonseca</a>, K-Lab, University of Geneva.
