

# Introduction

`fatools` is a docker container with several tools to handle FASTA files.



# Usage

To use the tool, you need to mount the working directory on `/cwd`. Example:
```bash
docker run --rm -v .:/cwd registry.gitlab.unige.ch/amr-genomics/fatools fa_reheader
docker run --rm -v .:/cwd registry.gitlab.unige.ch/amr-genomics/fatools fa_rotate
```



# FASTA format 
For FASTA header format consult: https://www.ncbi.nlm.nih.gov/genbank/fastaformat/


