From 05f15db06736431840075f6a2ff7ae20e386b422 Mon Sep 17 00:00:00 2001
From: Julien Prados <julien.prados@unige.ch>
Date: Wed, 15 Jan 2025 08:48:37 +0100
Subject: [PATCH] add docker.io to FROM directive

---
 Dockerfile |  2 +-
 Readme.md  | 12 ++++--------
 2 files changed, 5 insertions(+), 9 deletions(-)

diff --git a/Dockerfile b/Dockerfile
index 714748a..2928675 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -1,4 +1,4 @@
-FROM python:3.10-slim-bullseye
+FROM docker.io/python:3.10-slim-bullseye
 
 RUN apt-get update -qq && apt-get install -y -qq \
     git \
diff --git a/Readme.md b/Readme.md
index c7e9445..7b839d9 100644
--- a/Readme.md
+++ b/Readme.md
@@ -2,19 +2,15 @@
 
 # Introduction
 
-`cgetools` is s docker container with an installation of several 
-[CGE]([https://bitbucket.org/genomicepidemiology/]) softwares and associated 
-databases (mlst,plasmidfinder,resfinder).
-
+`fatools` is s docker container with several command to handle FASTA files.
 
 
 # Usage
 
 To use the tool, you need to mount the working directory on `/cwd`. Example:
 ```bash
-docker run --rm -v .:/cwd registry.gitlab.unige.ch/amr-genomics/cgetools plasmidfinder.py
-docker run --rm -v .:/cwd registry.gitlab.unige.ch/amr-genomics/cgetools mlst.py
-docker run --rm -v .:/cwd registry.gitlab.unige.ch/amr-genomics/cgetools python3 -m resfinder
+docker run --rm -v .:/cwd registry.gitlab.unige.ch/amr-genomics/fatools fa_reheader
+docker run --rm -v .:/cwd registry.gitlab.unige.ch/amr-genomics/fatools fa_rotate
 ```
 
 
@@ -22,7 +18,7 @@ docker run --rm -v .:/cwd registry.gitlab.unige.ch/amr-genomics/cgetools python3
 
 To build the container, run:
 ```bash
-docker build --platform linux/amd64 -t registry.gitlab.unige.ch/amr-genomics/cgetools ./
+docker build --platform linux/amd64 -t registry.gitlab.unige.ch/amr-genomics/fatools ./
 ```
 
 
-- 
GitLab