Commit 7b0ed5e8 authored by Jean-Baptiste Delisle's avatar Jean-Baptiste Delisle
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add references in doc

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......@@ -4,8 +4,8 @@ sam documentation
The sam package provides two samplers:
- a Scaled Adaptive Metropolis algorithm (:doc:`_autosummary/sam.sam`), to robustly obtain samples from a target distribution,
- a COVariance Importance Sampling algorithm (:doc:`_autosummary/sam.covis`), to efficiently compute the model evidence (or other integrals).
- :doc:`_autosummary/sam.sam` : a Scaled Adaptive Metropolis algorithm (see [1]_, [2]_, [3]_), to robustly obtain samples from a target distribution,
- :doc:`_autosummary/sam.covis` : a COVariance Importance Sampling algorithm, to efficiently compute the model evidence (or other integrals).
It additionally includes tools (:doc:`_autosummary/sam.acf`)
to assess the convergence of the sam sampler (ACF, IAT),
......@@ -94,3 +94,10 @@ API Reference
sam
sam.acf
sam.logprior
References
----------
.. [1] `Haario et al., "An adaptive metropolis algorithm", 2001 <http://dx.doi.org/10.2307/3318737>`_.
.. [2] `Andrieu & Thoms, "A tutorial on adaptive MCMC", 2008, <https://doi.org/10.1007/s11222-008-9110-y>`_.
.. [3] `Delisle et al., "The HARPS search for southern extra-solar planets. XLIII. A compact system of four super-Earth planets orbiting HD 215152", 2018 <http://adsabs.harvard.edu/abs/2018A\%26A...614A.133D>`_.
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